1 Summary

This is the tutorial of the use of the neuRoDev package from doi to explore the processes of corticogenesis. The following chapters allow the inspection of the resource compendium (Chapter Network exploration) including both analyses shown in the article and additional examples and mode of use (Chapter Analysis tools, Chapter Mapping Bulk data, and Chapter Mapping Single-cell data). We also included an interactive eTrace tool to investigate patterns of gene(s) expression instantaneously Section Interactive eTrace.

1.1 Installation

To install the neuRoDev package from Github:

install.packages("devtools")

devtools::install_github("https://github.com/davilavelderrainlab/neuRoDev", dependencies = T)

The neuRoDev package uses SingleCellExperiment objects to store the corticogenesis, neurogenesis, and gliogenesis resources.

The resource and the data used as examples in this tutorial can be downloaded here.